Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916342.1_cds_XP_016466050.1_58944
CDS Infomation

[gene=LOC107788833] [db_xref=GeneID:107788833] [protein=probable helicase MAGATAMA 3] [protein_id=XP_016466050.1] [location=join(57124..57134,57767..57878,57962..58067,59520..59617,59704..59817,59928..60020,63968..64021,64747..64805,65401..65485,66296..66664,66792..66914,67011..67100,67532..67738)] [gbkey=CDS]
Sequence

ATGGCAGACAAATACAATCACTGGGGAAAAGCATCTCCATGGTTAGCTGGGATTAATCCT
CTAGATCAAGAAATGCCTATAGATGGGGATGATGGATTTTTCCCTACATCTGGCAATGAG
TTGAAACCGGAAGTAGTTAATTCCAGTCGAAAGTATCGTGTTCGTGTTCTTGTTTGTGCT
CCGTCAAATTCTGCTCTCGACGAGATTGTTTTGCGCATTCTAAACACAGGTATCCGGGAT
GAAAACGACCGTGCATACAGTCCTAAAATAGTACGAATTGGTCTTAAAGCGCATCATTCT
GTGCAGGCGGTCTCCATGGATTACCTCGTGGAACAAAGACTGTCCGGCATGGACTCACAA
ACTGGTGATAGGCAGAAGCAAGGAGGGCCGCTGAAAGATAAAGACAGCATTCGTGGTTCT
ATTCTGGATGAGGCTGTAATTGTGTTCTCTACTCTTAGCTTCAGTGCTTCCCCTGTTTTC
AGTAAATTGAATCGTGGTTTTGATGTTGTTATAATAGATGAAGCTGCTCAAGCTGTGGAA
CCATCAACACTTGTCCCGTTGTCCAATGGGTGCAAACAAGTATTCCTGGTCGGTGATCCA
GTTCAACTGCCAGCCACTGTGATCTCACCTATTGCTGGAAATTTTGGATATTGCGTCAGT
TTATTTGAGAGACTTCAAAGGGGTGGATATCCAGTGCAGATGCTGAAGACTCAATATCGC
ATGCATCCAGAGATAAGGAACTTCCCTTCCAGAGAATTTTACAAGGAGGCTCTAGAAGAT
GGACCTGATGTTGAAGAGCAGACAAAGCGCTCTTGGCACGAATATCGTTGCTTTGGACCT
TTTTGCTTTTTTGACATACACGAGGGAAAGGAGTCTCAGCCATCTGGAAGTGGTTCTTGG
CAAAATGTTGATGAGGTTGAGTTTGTGCTTGCAATGTATCACAAACTAGTCTCCAGATAT
CCAGAGCTTAAATCAAGTTCCCGGTTAGCTATTATATCACCATATAGGCATCAAGTTAAA
CTTTTGCGTCAAAAATTCCGAGAAACATTTGGTGTGGAGTCTGACAAAGTAGTTGATATC
AACACTGTTGATGGTTTCCAGGGACGTGAAAAGGATGTTGCGATATTTTCATGTGTTCGA
GCGAGCAAAGATAAAGGCATTGGTTTTGTTGCTGATTATCGGCGAATGAATGTTGGCATA
ACCAGAGCACGGTCTTCTGTCCTGGTTGTTGGTTCTGCATCCACATTAAGAAGAGGAGAC
AAACATTGGCAAAATTTAGTTGACAGCGCGGAGCAGAGAAATGCACTCTACAAGGTCTCC
AAGCCCTACGATGAATTCTTCAGTCAGGAAAATCTCAAATTAATGGAAGTGGAAGCTATG
CATGATAAACCTGAAGCTCCACCAGAAGATATGGACGTTGAAGTGCCCGTTGATGGTACT
GCTGTTGAAGCTGATCCAGTGCAACCGGAAGAAAATGACTGGGGTGATGCTGGAGAAGAA
GGGGGCTACGATGAGGACTAG

Peptide Sequence

PEP ID

XP_016466050.1
PEP Infomation

PREDICTED: probable helicase MAGATAMA 3 [Nicotiana tabacum]
Sequence

MADKYNHWGKASPWLAGINPLDQEMPIDGDDGFFPTSGNELKPEVVNSSRKYRVRVLVCA
PSNSALDEIVLRILNTGIRDENDRAYSPKIVRIGLKAHHSVQAVSMDYLVEQRLSGMDSQ
TGDRQKQGGPLKDKDSIRGSILDEAVIVFSTLSFSASPVFSKLNRGFDVVIIDEAAQAVE
PSTLVPLSNGCKQVFLVGDPVQLPATVISPIAGNFGYCVSLFERLQRGGYPVQMLKTQYR
MHPEIRNFPSREFYKEALEDGPDVEEQTKRSWHEYRCFGPFCFFDIHEGKESQPSGSGSW
QNVDEVEFVLAMYHKLVSRYPELKSSSRLAIISPYRHQVKLLRQKFRETFGVESDKVVDI
NTVDGFQGREKDVAIFSCVRASKDKGIGFVADYRRMNVGITRARSSVLVVGSASTLRRGD
KHWQNLVDSAEQRNALYKVSKPYDEFFSQENLKLMEVEAMHDKPEAPPEDMDVEVPVDGT
AVEADPVQPEENDWGDAGEEGGYDED

Transcript Sequence

Gene sequence data has not been registered.